Sequencher

Sequencher: The Premier DNA Sequence Analysis Software for Sanger and NGS Datasets

If your research involves DNA sequencing, try Sequencher and see how it can increase the speed, quality, and consistency of your data analysis.

Compatible with a wide variety of Sanger (Capillary Electrophoresis) file formats
Compatible with a wide variety of Next-generation (NGS) DNA sequence file formats
Lightning-fast assembly
Short learning curve
Powerful editting tools

Sequencher provides the tools you need to handle all your DNA sequence assembly and analysis tasks.

Import data from any of the major CE instruments
Clean up raw data by trimming vector, low quality base calls and other artifacts
Perform alignment, de novo, or reference based assembly with flexible, understandable parameters
Move easily between aligned data and electropherograms. Analyze traces locally or globally to find secondary, uncalled peaks
Instantly and intuitively move between raw sequence multi-frame translation and restriction maps
Set up reusable templates for common projects, letting you use base numbering and features from the reference sequence to annotate new alignments
Compare similar projects using Sequencher
Variance Table
Take advantage of powerful, easy-to-use tools to help you detect mutations and SNPs and refer back to raw data to eliminate sequencing artifacts
Generate reports that quickly and clearly document your findings

Easy, fast, and powerful has always been our motto, and when it comes to NGS data analysis, this has never been more accurate.

Easily import your NGS reads with Sequencher
Choose either Maq or GSNAP as your alignment algorithm, using SequencherÔÇÖs easy-to-use interface to protect you from the command line
View your results using Tablet in a number of different modes, highlighting bases in different colors and read directions. Get information on individual reads and read pairs and arrange the stacking of the reads to reveal pairings. Tablet has controls to enable translations, zoom in and out, as well as highlight variant bases making it a cinch to explore your reads
SNP analysis and methylation studies
Reference Sequence alignment
Variance Table for quick and easy SNP detection
Extensive data import and export capabilities
NCBI BLAST search
Forensic mtDNA profiling