Tablet(1) is a high performance viewer for next-generation sequence alignments. View and review your Maq, GSNAP, BWA-MEM, or Velvet results in a number of different modes, highlighting bases in different colors and read directions. Get information on individual reads and read pairs and arrange the stacking of the reads to reveal pairings. Tablet has controls to enable translations, zoom in and out, as well as highlight variant bases making it a cinch to explore your reads.
(1) Ian Milne, Micha Bayer, Linda Cardle, Paul Shaw, Gordon Stephen, Frank Wright and David Marshall Tablet next generation sequence assembly visualization BioInformatics 2010 26: 40-402